290 likes | 313 Views
Reactome. Information maintained by cross-referenced. We will talk on:. Reactome : Data base of reactions , pathways of human biology. Simple search : protein name -> reactions ,pathway. pathway -> reactions, proteins . Tools: SkyPraint BioMart.
E N D
We will talk on: • Reactome: Data base of reactions , pathways of human biology. • Simple search: protein name -> reactions ,pathway. pathway -> reactions, proteins . • Tools: SkyPraint BioMart. • Advantage, disadvantage
Reactome-HomePage contains five sections (from top to bottom):
Reactome-HomePage Containes five sections (from top to bottom): • The Navigator bar provides access to the rest of the Reactome web site: • TheSearch panel allows you to perform text-based searches on Reactome.
Reactome-HomePage Containes five sections (from top to bottom): • The Navigator bar provides access to the rest of the Reactome web site: • TheSearch panel allows you to perform text-based searches on Reactome. • TheSpecies chooserallows you to choose a species.
The reactions map and topics list Blue arrow: If the reaction is confirm by exp Pink arrow: if the reaction has not been confirmed directly but has been inferred manually from another reaction (either in the selected species or another species) Green arrow: if the reaction has been inferred computationally Grey arrow :Reactions that are not part of the selected Pathway Topic
Results Input Output Previous reaction Next reaction
Reactome-Tools • Reactome-SkyPainter • BioMart
In summary • Pathways, reactions in human biology • Graphic map • BioMart • Skypainter • But: • No description of the methods in the result pages