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Reactome: Pathways and Reactions Database with Comprehensive Bioinformatics Tools

Reactome is an extensive data base of reactions and pathways in human biology. Utilize simple search features to navigate protein names to relevant reactions and pathways. Benefit from tools like SkyPraint and BioMart for in-depth analysis. Explore Reactome statistics, advantages, and disadvantages to enhance your research outcomes.

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Reactome: Pathways and Reactions Database with Comprehensive Bioinformatics Tools

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  1. Reactome

  2. Information maintained by cross-referenced

  3. We will talk on: • Reactome: Data base of reactions , pathways of human biology. • Simple search: protein name -> reactions ,pathway. pathway -> reactions, proteins . • Tools: SkyPraint BioMart. • Advantage, disadvantage

  4. Reactome-statistics

  5. Reactome-HomePage contains five sections (from top to bottom):

  6. Reactome-HomePage Containes five sections (from top to bottom): • The Navigator bar provides access to the rest of the Reactome web site: • TheSearch panel allows you to perform text-based searches on Reactome.

  7. TheSearch panel

  8. Results

  9. Reactome-HomePage Containes five sections (from top to bottom): • The Navigator bar provides access to the rest of the Reactome web site: • TheSearch panel allows you to perform text-based searches on Reactome. • TheSpecies chooserallows you to choose a species.

  10. Species chooser

  11. The reactions map

  12. The reactions map and the topics list

  13. The reactions map and topics list

  14. The reactions map and topics list Blue arrow: If the reaction is confirm by exp Pink arrow: if the reaction has not been confirmed directly but has been inferred manually from another reaction (either in the selected species or another species) Green arrow: if the reaction has been inferred computationally Grey arrow :Reactions that are not part of the selected Pathway Topic

  15. The reactions map and topics list

  16. Results

  17. Results

  18. Results

  19. Results Input Output Previous reaction Next reaction

  20. Reactome-Tools • Reactome-SkyPainter • BioMart

  21. Reactome-SkyPainter

  22. Reactome-SkyPainter

  23. Reactome-SkyPainter-Results

  24. Reactome-BioMart

  25. Reactome-BioMart

  26. Reactome-BioMart-Results

  27. Reactome-BioMart

  28. In summary • Pathways, reactions in human biology • Graphic map • BioMart • Skypainter • But: • No description of the methods in the result pages

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