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Bioinformatics

Biological Data. Computer Calculations. +. Bioinformatics. Bioinformatics Topics for 2006. Overview of Full Range of Topics in Bioinformatics Details on "Classic" (core) Bioinformatics Comparing Sequences Dynamic Programming, Substitution Matrices, Scoring Systems and P-values

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Bioinformatics

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  1. Biological Data Computer Calculations + Bioinformatics

  2. Bioinformatics Topics for 2006 • Overview of Full Range of Topics in Bioinformatics • Details on "Classic" (core) Bioinformatics • Comparing Sequences • Dynamic Programming, Substitution Matrices, Scoring Systems and P-values • Rapid similarity search via Hashing (BLAST) • Multiple Alignments and Patterns (HMMs) • Sequence-structure relationships • Statistical Propensities & Sec. Struc. Predictions • Comparing Structures • LSQ fit and Structure Alignment

  3. Bioinformatics Topics for 2006 • Additional Focus Topics (all if time) • Expression Data Analysis • Molecular Simulation • Gene Finding and Intergenic Analysis • Related Course CS/CBB 545b • Data mining with Applications in Life Sciences • Tu and Th 2:30-3:45 in Spring • Focus on Mining Techniques • Applications to Protein Networks • GersteinLab.org/courses/452 • Past Years Handouts

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