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Learn about the key concepts of biochemistry, including the difference between organic and inorganic molecules, the importance of carbon, and the role of carbohydrates, lipids, nucleic acids, proteins, and enzymes in living organisms.
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Biochemistry To be used with Biochemistry Guided Notes
Organic vs. Inorganic Molecules Contains Carbon (C), Hydrogen (H), and Oxygen (O) (Example: C6H12O6) Does not contain C, H, and O at same time (Example: H20) Carbon is the key element—the element of life Water: makes up 60 to 98% of living things—necessary for chemical activities and transport Carbon can bond with itself and form many times for bonds (single, double, triple and rings) Salts: help maintain water balance Example: Gatorade—electrolytes 4 Organic Molecules: Carbohydrates Lipids Nucleic Acids Proteins Acids and Bases: -pH Scale -Important for enzyme function
Carbohydrates • Sugars and complex carbohydrates (starches) • Contain the carbon, hydrogen, and oxygen (the hydrogen is in a 2:1 ratio to oxygen) • End in -ose
Monosaccharides • Simple sugars • All have the formula C6H12O6 • Have a single ring structure • Example: Glucose
Disaccharides • Double sugars • All have the formula C12H22O11 • Example: sucrose (table sugar)
Polysaccharides • Three or more simple sugar units • Examples: • Glycogen: animal starch stored in the liver and muscles • Cellulose: indigestible in humans: forms cell wall in plants • Starches: used as energy storage
How are complex carbohydrates formed? • Dehydration synthesis: combining simple molecules to form a more complex one with the removal of water • Example: • monosaccharide + monosaccharide disaccharide + water • C6H12O6 + C6H12O6 C12H22O11 + H2O • polysaccharides are formed from repeated dehydration synthesis
Disaccharide + Water
How are complex carbohydrates broken down? • Hydrolysis: the addition of water to a compound to split it into smaller subunits • also called chemical digestion • Example: • disaccharide + water monosaccharide + monosaccharide • C12H22O11 + H2O C6H12O6 + C6H12O6
Lipids • Lipids (Fats): lipids chiefly function in energy storage, protection, and insulation • contain carbon, hydrogen, and oxygen but the H:O is not in a 2:1 ratio • Examples: fats, oils, waxes, steroids • Lipids tend to be large molecules
Lipids • Lipids are formed from one glycerol molecule and 3 fatty acids • 3 fatty acids + glycerol lipid (fat)
4 Types of Lipids • Fats: from animals • Saturated: solid at room temperature • All single bonds in the fatty acid tail • Very difficult to break down
4 Types of Lipids 2. Oils: from plants • Unsaturated: liquid at room temperature • Presence of a double bond in the fatty acid tail • Ex. Vegetable oils
Four Types of Lipids 3. Waxes: ear wax, bees wax
4 Types of Lipids 4. Steroids: • One important molecule that is classified in this category is cholesterol • High levels could lead to heart disease
Proteins • Proteins: contain the carbon, hydrogen, oxygen, and nitrogen • Made at the ribosomes • Composed of amino acid subunits
Proteins • Major Protein Functions: • Growth and repair • Energy • Usually end with -in: • Example: Hemoglobin
Making Proteins • Dehydration synthesis of a dipeptide • Dipeptide: formed from two amino acids • amino acid + amino acid dipeptide + water
Breaking down Proteins • Hydrolysis of a dipeptide • dipeptide + water amino acid + amino acid
Proteins • Polypeptide: composed of three or more amino acids • These are proteins • Examples: insulin, hemoglobin, and enzymes • There are a large number of different types of proteins: • The number, kind and sequence of amino acids lead to this large variety
Nucleic Acids • Nucleic Acids: present in all cells • DNA: contains the genetic code of instructions through the synthesis of proteins • found in the chromosomes of the nucleus • RNA: directs protein synthesis • found in nucleus, ribosomes & cytoplasm
Enzymes • Catalyst: inorganic or organic substance which speeds up the rate of a chemical reaction without entering the reaction itself • Examples: enzymes (organic) and heat (inorganic) • Enzymes: organic catalysts made of protein • most enzyme names end in –ase • enzymes lower the energy needed to start a chemical reaction (activation energy)
How enzymes work • Enzyme forms a temporary association with a the substance it affects • These substances are known as substrates. • The association between enzyme and substrate is very specific—like a Lock and Key • This association is the enzyme-substrate complex • While the enzyme-substrate complex is formed, enzyme action takes place. • Upon completion of the reaction, the enzyme and product(s) separate • The enzyme is now able to be reused
Enzyme Terms • Active site: the pockets in an enzyme where substrate fits • Usually enzyme is larger than substrate • Substrate: molecules upon which an enzyme acts • All enzymes are proteins • Coenzyme: non-protein part attached to the main enzyme • Example: vitamins
Proteins in action enzyme substrate -------------> product Lock and Key Model
Factors Limiting Enzyme Action • pH: pH of the environment affects enzyme activity • Example: pepsin works best in a pH of 2 in stomach Amylase works best in a pH of 6.8 in mouth--saliva
Factors Limiting Enzyme Action • Temperature: as the temperature increases the rate of enzymes increases • Optimum Temperature: temperature at which an enzyme is most affective • Humans it is 37 degrees C or 98.6 degrees F • Dogs between 101 and 102 F
When Temperatures Get Too High • Denature: • Change in their shape so the enzyme active site no longer fits with the substrate • Enzyme can't function • Above 45 C most enzymes are denatured • Why do we get a fever when we get sick?
Factors Limiting Enzyme Action • Concentration of Enzyme and Substrate • With a fixed amount of enzyme and an excess of substrate molecules • the rate of reaction will increase to a point and then level off • Leveling off occurs because all of the enzyme is used up • Excess substrate has nothing to combine with • Add more enzyme reaction rate increases again