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1.Genes não Corinebacterineae

1.Genes não Corinebacterineae. Específicos de C. pseudotuberculosis Transferidos de outros clados. txid85007[Orgn] AND chromosome[Replicon Type] AND complete[PROP] AND reference[PROP]. 110,052 seqs. RGMG. 26 genomes: Corynebacterium (7) Mycobacterium (17) Rhodococcus (1)

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1.Genes não Corinebacterineae

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  1. 1.Genes não Corinebacterineae Específicos de C. pseudotuberculosis Transferidos de outros clados

  2. txid85007[Orgn] AND chromosome[Replicon Type] AND complete[PROP] AND reference[PROP] 110,052 seqs RGMG 26 genomes: Corynebacterium (7) Mycobacterium (17) Rhodococcus (1) Nocardia (1) tBLASTn CpCDS 317 NH-CpCDS C. pseudotuberculosis: SMase D Serine protease precursor tBLASTn Other txid85007 310 NH-CpCDS tBLASTn 30 CpCDS 26 distinct UniprotKB + nr 280 “no hit”

  3. De onde eles vieram?

  4. Hit Occurence in other clades

  5. 2.Homologia com baixa similaridade Caso da SMase Matrizes PSSM para COG Matrizes para novos clusters Seed Linkage

  6. COG COG (psi)tblastn PSSM 114,320 86 hits PSSM not BLOSUM tBLASTn nr Tx85007 Clusters Ex: Cp-V1.6830 COG0419 Cp-V1.2590 COG1178 48 hits PSSM not “nr” 4 hits: Not Corinebacterineae COG annotated common No hit

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