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Work/Activities (July – November 2004) State Of the Art (SOA) review Tackling BioMedical Tasks

WP5: Methods, Technologies & Tools. Consortium Meeting July 16,17 2004 Barcelona Spain. Work/Activities (July – November 2004) State Of the Art (SOA) review Tackling BioMedical Tasks. George Potamias FORTH. WP5 & FORTH Work: July-November 2004. WP5 - SOA review: Philosophy!.

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Work/Activities (July – November 2004) State Of the Art (SOA) review Tackling BioMedical Tasks

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  1. WP5: Methods, Technologies & Tools Consortium Meeting July 16,17 2004 Barcelona Spain Work/Activities (July – November 2004) State Of the Art (SOA) review Tackling BioMedical Tasks George Potamias FORTH

  2. WP5 & FORTH Work: July-November 2004

  3. WP5 - SOA review:Philosophy! • Target audience • Computer Scientists • Bioinformaticians • Med-Informaticians • Biologists • HealthCare professionals • Structure BioMedical Task Methods, Technologies, Tools

  4. WP5 - SOA review:Sections 120 pages

  5. WP5 - SOA review:Structure Description Linksto S/W, Web-sites, DataBases, … References

  6. Appendix A– Definitions of Basic Terms From the BIOINFOMED study: http://bioinfomed.isciii.es/ Appendix B- Dictionary of Genetic/Genomic Terms From: http://www.ornl.gov/sci/techresources/Human_Genome/publicat/primer2001/glossary.shtml Appendix C– Selected Bibliography From the IMIA Yearbook of Medical Informatics 2004 Special Topic: Towards Clinical Bioinformatics Haux R, Kulikowski C (eds),Schattauer Verlagsgesellschaft mbH, Stuttgart ISBN: 3-7945-2336-9 http://www.med.uni-heidelberg.de/mi/yearbook/2004/yearbook_2004.htm Appendix D - Links to Databases & Tools Contributed by:Hans-Peter Eich, Medical Faculty at Heinrich-Heine University, Germany WP5 - SOA review:Extra Links & Refs

  7. WP5 - SOA review:Content Statistics

  8. WP5 - SOA review: Contributions

  9. Plan • Finalize … December 15, 2004 • Contributions … November 30, 2004 • Description: per section/sub-section (Text, Paper … not 100nds of them !!!) • Links / Refs:per section/sub-section WP5 - SOA review: … FINALIZE it • INTRO: Extra material ??? • BI, MI: (more or less) Complete • BMI: Needs extra material + refinement

  10. Tackling BioMedical Tasks: The INFOBIOMED Studies • Identify/Focus-on Application Domain • Public-domain and/or WP6 • Acquire Data/Info-material (common files/ representation) • Define BI/MI tasks e.g., • Gene-Expression Profiling (GEP) --  Clinical Profiling Drug Targeting • GEP  Gene Regulatory Networks • Gene-Markers -- Link/Support by literature • Gene Regulatory Networks  text-mining support • ….. • Partner interest & assignment • Report & Disseminate (publications, IBM deliverable) • INFOBIOMED contests …

  11. Plan Tackling BioMedical Tasks: The INFOBIOMED Studies -2- • Proposals … End January 2005 • (mini) WP5 + WP6 Scientific Workshop What • Presentations/short-papers (Studies, BMI approaches) • Finalize INFOBIOMED studies • Report (WP5 + WP6  roadmap) When • Mid February 2005 Where • FORTH (Crete)

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