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Easy Installation Examples of <Program Name> on Windows and Unix Systems

Learn about the simple installation process of <program name> with this presentation. Choose from options like Auto mode or manual setup. Access <program name> via various input sources and view local databases. Get started with this powerful tool easily!

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Easy Installation Examples of <Program Name> on Windows and Unix Systems

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  1. Easy installation • Examples in this presentation from windows and unix installations. • <programe name> • Options or Auto mode • In windows a self extracting file, after installation a shortcut is created:

  2. Input sequence source • Local file • Local Database • web • Sequence input as database:sequence_name • showdb command: displays local databases

  3. emboss.ini

  4. FLAVODOXIN B Flav_azoch: Azotobacter chroococcum mcd 1 FLAVODOXIN 2 Flav_azovi: Azotobacter vinelandii

  5. FLAVONOL SYNTHASE Flav_soltu: Solanum tuberosum (Potato) FLAVODOXIN Flav_rhoca: Rhodopseudomonas capsulata

  6. Others • geecee • fuzzpro • garnier • plotorf • Restrict • Helixturnhelix

  7. http://emboss.sourceforge.net/

  8. EMBOSS interfaceshttp://emboss.sourceforge.net/interfaces/ • Command line: Windows, Cygwin • Java: • Jemboss (needs java web start) • PERL and other scripts: • Bio::Emboss Module • BioPerl EMBOSS only a part • BioPython EMBOSS only a part • Web: • EMBOSSGUI (needs Apache or other webserver) • Pise • W2H • wEMBOSS • Other GUIs: • Staden • Kaptain (KDE2)

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