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T he A rabidopsis I nformation R esource ( TAIR ) arabidopsis

T he A rabidopsis I nformation R esource ( TAIR ) http://arabidopsis.org. TAIR workshop outline. Overview of the TAIR web site (Peifen Zhang) TAIR 8 genome annotation (David Swarbreck) Gene functional annotation from the literature (Donghui Li). What is TAIR?.

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T he A rabidopsis I nformation R esource ( TAIR ) arabidopsis

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  1. The Arabidopsis Information Resource (TAIR) http://arabidopsis.org

  2. TAIR workshop outline • Overview of the TAIR web site (Peifen Zhang) • TAIR 8 genome annotation (David Swarbreck) • Gene functional annotation from the literature (Donghui Li)

  3. What is TAIR? • The US NSF-funded project begun in 1999 • Web resource for Arabidopsis data and stocks • Literature-based manual annotation of gene function • Genome annotation (gene structure, computational gene function)

  4. TAIR is used worldwide

  5. Introduction to TAIR Quick Search Advanced Search

  6. Searching TAIR

  7. Locus ID

  8. Locus detail page is your TAIR gateway General functional info

  9. cDNA clones

  10. Associated seed stocks

  11. TAIR’s most popular visualization and analysis tools Genome Browser SeqViewer GBrowse AraCyc BLAST

  12. SeqViewer

  13. AraCyc • Visualization of Arabidopsis biochemical pathways, compounds and enzymes.

  14. AraCyc pathway page example

  15. AraCyc • Visualization of Arabidopsis biochemical pathways, compounds and enzymes. • Overlay of large-scale experimental data onto the Arabidopsis metabolic map using the Omics Viewer

  16. Overlay microarray data

  17. PMN & SGN & Gramene Joint Workshop on Metabolic Pathway Databases Monday evening at 7:30

  18. BLAST

  19. Customized datasets TAIR genome release Other Arabidopsis sequences All plant sequences

  20. Ordering DNA clones and seed stocks

  21. Before you can put an order Register yourself at TAIR Associate yourself to a lab Wait 1–2 days for account activation notice

  22. mcclintock

  23. TAIR workshop outline • Overview of the TAIR web site (Peifen Zhang) • TAIR 8 genome annotation (David Swarbreck) • Gene functional annotation from the literature (Donghui Li)

  24. Any questions for this session?

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