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Avian Influenza Surveillance and Outbreak Analysis

Comprehensive study on avian influenza surveillance across regions, analyzing outbreaks and strains to establish patterns and mitigation strategies.

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Avian Influenza Surveillance and Outbreak Analysis

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  1. A/white bellied Bustard/UAE/1127.1/2005 A/quail/UAE/1136/2005 A/Stone Curlew/UAE/1127.3/2005 38 A/white bellied bustard/UAE/997/2005 51 A/white bellied Bustard/UAE/1036/2005 A/white bellied Bustard/UAE/1127.1/2005 A/stone curlew/UAE/1127.3/2005 A/stone curlew/UAE/1147/2005 A/quail/UAE/1136/2005 31 A/dove/UAE/466/2006 A/Stone Curlew/UAE/1147/2005 HA A/chicken/Pakistan(NARC)/1617/2005 100 A/dove/UAE/466/2006 HA A/chicken/Pakistan(NARC)/1624/2005 A/chicken/Pakistan(NARC)1559/2005 A/white Bellied Bustard/UAE/997/2005 HA 50 A/chicken/Pakistan(NARC)/1541/2005 A/falcon/UAE/897/2007 HA 73 A/chicken/Faisalabad/Pakistan/NARC-805/2004 A/Houbara/UAE/78/2006 HA A/quail/Bangladesh/907/2009 A/poultry/UAE/1831/2005 HA A/houbara/UAE/78/2006 100 A/Bangladesh/0994/2011 A/poultry/UAE/1831/2005 100 A/quail/Bangladesh/907/2009 A/chicken/Pakistan/2/99 A/chicken/Shantou/22116/2005 A/quail/UAE/1819/2006 HA 44 A/Hong Kong/1074/99 A/chicken/Faisalabad/Pakistan/NARC-805/2004 A/Hong Kong/1073/1999 86 69 A/chicken/Pakistan(NARC)/1559/2005 A/quail/Hong Kong/G1/97 100 A/chicken/Pakistan (NARC)/1624/2005 A/quail/UAE/1819/2006 88 A/chicken/Dubai/463/2003 A/chicken/Pakistan(NARC)/1541/2005 52 A/chicken/Dubai/339/2001 100 A/falcon/UAE/897/2007 A/chicken/Dubai/339/2001 50 A/quail/Dubai/302/2000 A/Hong Kong/33982/2009 227402 HA A/quail/Dubai/301/2000 A/quail/Dubai/303/2000 A/Hong Kong/1073/1999 156125 HA A/chicken/Beijing/1/94 A/Hong Kong/3239/2008 A/chicken/Beijing/1/2000 95 A/Hong Kong/69955 39 A/chicken/Beijing/3/1999 A/chicken/Hong Kong/NT155/2008 A/chicken/Hong Kong/YU341/2008 A/chicken/Beijing/nl/2002 34 A/chicken/Hong Kong/CRA45/2010 A/chicken/Beijing/1/1994 A/chicken/Hong Kong/TP38/2003 A/Hong Kong/33982/2009 A/swine/HK/9A/1998 A/chicken/Hong Kong/NT10/2011 100 A/chicken/Nanchang/1-0016/2000 A/chicken/Hong Kong/G9/1997 100 70 A/chicken/Hong Kong/YU158/2008 A/duck/Nanchang/1-0070/2000 A/swine/Hong Kong/9A1998 62 A/chicken/Hong Komg/G9/1997 A/guinea fowl/Hong Kong/NT101/2003 A/chicken/Beijing/1/1997 99 A/chicken/Nanchang/1-0016/2000 45 A/chicken/Beijing/L1/2005 65 A/duck/Nanchang/1-0070/2000 A/guinea fowl/Hong Kong/NT101/2003 A/duck/Hong Kong/Y280/97 A/Shaoguan/408/98 A/duck/Nanchang/6-361/2001 96 98 A/duck/Nanchang/6-361/2001 A/Shaoguan/408/98 Y280-like A/Nanchang/CH2/2000 A/chicken/Hong Kong/TP38/2003 52 A/Nanchang/CH3/2000 A/chicken/Beijing/1/2006 A/Nanchang/D1/2000 100 99 A/Hong Kong/3239/2008 HA Y280-like A/Nanchang/D2/2000 A/chicken/Korea/S23/2004 A/turkey/Texas/1/1981 65 A/chicken/Korea/S26/2004 99 A/turkey/Texas/28737/1981 70 A/turkey/Texas/2/1981 A/chicken/Korea/25232-96006/96 95 A/goose/Minnesota/5733-1243/1980 HA A/Korean native chicken/Korea/K040110/2010 100 A/turkey/California/6889/1980 A/duck/Hong Kong/439/1997 94 A/duck/Hong Kong/91/76 A/turkey/Minnesota/511/1978 A/turkey/Pavia/141/83 A/duck/Hong Kong/91/1976 A/turkey/Wisconsin/66 A/chicken/Korea/S26/2004 A/shorebird/Delaware/277/1999 100 A/shorebird/Delaware/286/2003 100 100 A/duck/New York/83793/2002 A/chicken/Korea/25232-96006/1996 A/shorebird/Delaware/163/2003 A/shorebird/Delaware/249/2006 A/shorebird/Delaware/163/2003 100 A/turkey/Minnesota/511/78 99 100 A/shorebird/Delaware/293/2003 A/turkey/California/1054T/85 A/turkey/California/1054C/85 A/shorebird/Delaware/249/2006 A/turkey/California/1/88 A/duck/Hong Kong/439/1997 155298 HA 92 A/goose/Minnesota/5733-1243/80 A/mallard/England/7798-6499/2006 97 A/shorebird/Delaware/276/1999 85 100 A/shorebird/Delaware/266/1999 0.02 B A 100 100 73 80 G1 97 98 97 G1 99 99 61 99 85 100 63 78 93 60 100 96 chicken/ Beijing 70 97 99 83 98 100 Y280 100 Y280 92 80 100 90 99 99 94 Korea 100 98 99 100 96 North American/Old Eurasian North American/Old Eurasian Korea 92 76 100 100 98 100 73 A/turkey/Texas/1/1981 99 A/turkey/Texas/2/1981 100 Figure 1 A/turkey/Texas/28737/81 0.02

  2. A/Hangzhou/1/2013 68 A/Zhejiang/01/2013 A/Taiwan/1/2013 A/Shanghai/4/2013 A/Environment/Hangzhou/34/2013 64 A/Shanghai/3/2013 A/Environment/Shanghai/S1088/2013 A/environment/Shanghai/S1088/2013 40 A/Zhejiang/2/2013 A/environment/Hangzhou/34/2013 62 A/Shanghai/4/2013 A/chicken/Shanghai/S1053/2013 55 96 A/Shanghai/2/2013 A/chicken/Shanghai/S1053/2013 A/Anhui/1/2013 A/pigeon/Shanghai/S1069/2013) 95 89 A/Shanghai/1/2013 A/Hangzhou/1/2013 98 100 A/Hangzhou/3/2013 A/Zhejiang/01/2013 100 A/Shanghai/2/2013 | PB2 A/pigeon/Shanghai/S1069/2013 97 48 A/Anhui/1/2013 A/chicken/Beijing/nl/2002 100 A/Taiwan/1/2013 25 A/chicken/Dubai/339/2001 PB1 60 A/Shanghai/1/2013 A/Korean native chicken/Korea/K040110/2010 PB1 55 A/Hangzhou/2/2013 A/chicken/Beijing/1/2000 54 A/chicken/Hong Kong/G9/1997 22 A/chicken/Beijing/1/1994 A/Hong Kong/33982/2009 PB2 79 A/swine/Hong Kong/9A/1998 PB1 100 A/Hong Kong/1073/1999 PB2 100 74 A/chicken/Beijing/2/1997 91 A/chicken/Dubai/339/2001 A/chicken/Beijing/L1/2005 55 A/quail/Bangladesh/907/2009 100 A/chicken/Nanchang/1-0016/2000 PB1 84 A/chicken/Beijing/L1/2005| A/duck/Nanchang/1-0070/2000 PB1 83 74 96 A/swine/Hong Kong/9A/1998 100 A/guinea fowl/Hong Kong/NT101/2003 PB1 A/chicken/Hong Kong/TP38/2003 A/chicken/Beijing/1/1994 98 A/Hong Kong/3239/2008 A/duck/Hong Kong/439/1997 53 86 100 A/chicken/Beijing/7/2005 A/Korean native chicken/Korea/K040110/2010 56 A/chicken/Nanchang1-0016/2000 A/chicken/Beijing/1/2006 95 100 37 A/duck/Nanchang/1-0070/2000 A/duck/Hong Kong/439/1997 A/chicken/Hong Kong/TP38/2003 86 A/chicken/Hong Kong/G9/1997 69 A/chicken/Beijing/nl/2002 93 A/Hong Kong/1073/1999 100 A/guinea fowl/Hong Kong/NT101/2003 74 58 A/Hong Kong/33982/2009 A/Hong Kong/3239/2008 PB2 93 A/quail/Bangladesh/907/2009 A/turkey/Minnesota/1/1988 A/ruddy turnstone/Delaware Bay/220/1995 99 54 A/ruddy turnstone/Delaware Bay/220/1995 A/turkey/Minnesota/1/1988 100 A/blue-winged teal/Guatemala/CIP049-01/2008 A/shorebird/Delaware/249/2006 96 99 A/blue-winged teal/Ohio/566/2006 A/northern shoverl/Mississippi/11OS145/2011 100 93 A/northern shoverl/Mississippi/11OS145/2011 A/blue-winged teal/Guatemala/CIP049-01/2008 67 92 A/shorebird/Delaware/249/2006 90 A/blue-winged teal/Ohio/566/2006 54 0.01 0.01 B A H7N9 H7N9 Figure 2

  3. A/Hangzhou/3/2013 A/Shanghai/3/2013 A/Hangzhou/1/2013 A/Anhui/1/2013 A/environment/Hangzhou/34/2013 53 A/Taiwan/1/2013 A/chicken/Shanghai/S1053/2013 39 A/Shanghai/2/2013 A/Shanghai/4/2013 39 A/Zhejiang/01/2013 A/Shanghai/1/2013 100 A/pigeon/Shanghai/S1069/2013 98 A/environment/Shanghai/S1088/2013 A/guinea fowl/Hong Kong/NT101/2003 PA A/chicken/Beijing/nl/2002 83 85 A/chicken/Hong Kong/TP38/2003 92 A/Hong Kong/1073/1999 A/chicken/Beijing/1/1994 61 A/chicken/Beijing/8/1998 100 A/swine/Hong Kong/9A/1998 70 A/chicken/Beijing/1/1995 35 A/chicken/Hong Kong/G9/1997 37 A/blue-winged teal/Guatemala/CIP049-01/2008 97 100 A/northern shoverl/Mississippi/11OS145/2011 A/blue-winged teal/Ohio/566/2006 A/shorebird/Delaware/249/2006 A/ruddy turnstone/Delaware Bay/220/1995 97 A/turkey/Minnesota/1/1988 36 A/chicken/Dubai/339/2001 85 A/quail/Bangladesh/907/2009 43 15 A/chicken/Nanchang/1-0016/2000 A/duck/Nanchang/1-0070/2000 100 92 A/Korean native chicken/Korea/K040110/2010 PA A/duck/Hong Kong/439/1997 39 A/Hong Kong/33982/2009 44 A/Hong Kong/3239/2008 PA 74 A/chicken/Beijing/1/2006 55 98 A/chicken/Beijing/20/2006 0.01 D C A/environment/Shanghai/S1088/2013 A/Shanghai/4/2013 A/Anhui/1/2013 | A/chicken/Shanghai/S1053/2013 A/Hangzhou/1/2013 63 A/Shanghai/3/2013 H7N9 H7N9 A/environment/Hangzhou/34/2013 86 A/Shanghai/2/2013 A/Taiwan/1/2013 99 A/Zhejiang/01/2013 A/Hangzhou/3/2013 93 A/Hangzhou/2/2013 100 A/pigeon/Shanghai/S1069/2013| 89 A/Shanghai/1/2013 A/guinea fowl/Hong Kong/NT101/2003 A/chicken/Hong Kong/TP38/2003 72 76 A/Hong Kong/3239/2008P 82 A/chicken/Beijing/1/2006 60 99 99 A/chicken/Beijing/7/2005 A/chicken/Beijing/ne/1999 A/chicken/Beijing/nl/2002 85 A/chicken/Nanchang/1-0016/2000 100 99 A/duck/Nanchang/1-0070/2000 A/Korean native chicken/Korea/K040110/2010 NP A/duck/Hong Kong/439/1997 155298 NP 81 A/chicken/Dubai/339/2001 64 41 A/quail/Bangladesh/907/2009 A/Hong Kong/1073/1999 100 A/Hong Kong/33982/2009 81 A/chicken/Beijing/1/1994 A/chicken/Beijing/8/1998 100 99 A/chicken/Hong Kong/G9/1997 40 A/swine/Hong Kong/9A/1998 A/turkey/Minnesota/1/1988 | A/shorebird/Delaware/249/2006 100 A/northern shoverl/Mississippi/11OS145/2011 94 A/blue-winged teal/Guatemala/CIP049-01/2008| 87 A/ruddy turnstone/Delaware Bay/220/1995 50 0.01 Figure 2

  4. A/Hangzhou/3/2013 A/pigeon/Shanghai/S1069/2013 A/chicken/Shanghai/S1053/2013 A/Shanghai/4/2013 A/Hangzhou/1/2013 A/environment/Shanghai/S1088/2013 66 A/Zhejiang/01/2013 A/Zhejiang/01/2013 9 A/environment/Hangzhou/34/2013 A/Shanghai/3/2013 A/Shanghai/1/2013 A/Shanghai/1/2013 A/Anhui/1/2013 A/Environment/Hangzhou/34/2013 A/Hangzhou/2/2013 67 100 A/Anhui/1/2013 A/Shanghai/2/2013 A/Shanghai/3/2013 A/Chicken/Shanghai/S1053/2013 95 A/Taiwan/1/2013 98 A/Hangzhou/1/2013 A/Zhejiang/2/2013 A/Shanghai/2/2013 A/chicken/Hong Kong/TP38/2003 100 A/Shanghai/4/2013 A/guinea fowl/Hong Kong/NT101/2003 99 91 A/pigeon/Shanghai/S1069/2013 34 A/chicken/Beijing/2/1997 97 A/Taiwan/1/2013 92 A/chicken/Beijing/L1/2005 33 A/chicken/Beijing/1/2006 A/chicken/Hong Kong/G9/1997 96 A/chicken/Beijing/7/2005 100 A/chicken/Beijing/1/2000 70 A/Hong Kong/3239/2008 M 30 77 A/chicken/Beijing/1/1995 43 A/Hong Kong/33982/2009 M A/chicken/Beijing/1/1998 59 A/chicken/Dubai/339/2001 93 A/swine/Hong Kong/9A/1998 NS 35 43 A/Hong Kong/1073/1999 A/chicken/Beijing/1/2006 100 A/quail/Bangladesh/907/2009 95 99 A/Hong Kong/3239/2008 NS A/chicken/Beijing/nl/2002 A/chicken/Nanchang/1-0016/2000 51 A/chicken/Hong Kong/TP38/2003 97 A/duck/Nanchang/1-0070/2000 100 A/guinea fowl/Hong Kong/NT101/2003 91 A/Hong Kong/33982/2009 A/chicken/Hong Kong/G9/1997 A/Hong Kong/1073/1999 74 98 A/chicken/Beijing/1/1994 A/chicken/Beijing/nl/2002 51 A/Chicken/Beijing/2/1997 91 A/Korean native chicken/Korea/K040110/2010 NS 81 A/chicken/Beijing/L1/2005 38 A/chicken/Dubai/339/2001 67 A/chicken/Beijing/8/1998 A/quail/Bangladesh/907/2009 65 100 A/swine/Hong Kong/9A/1998 49 A/duck/Hong Kong/439/1997 A/chicken/Nanchang/1-0016/2000 76 A/northern shoverl/Mississippi/11OS145/2011 62 A/duck/Nanchang/1-0070/2000 95 A/blue-winged teal/Ohio/566/2006 100 A/duck/Hong Kong/439/1997 100 A/shorebird/Delaware/249/2006 57 A/Korean native chicken/Korea/K040110/2010 A/ruddy turnstone/Delaware Bay/220/1995 40 A/turkey/Minnesota/1/1988 48 A/turkey/Minnesota/1/1988 A/blue-winged teal/Guatemala/CIP049-02/2008 100 0.005 A/shorebird/Delaware/249/2006 63 A/blue-winged teal/Ohio/566/2006 50 54 A/ruddy turnstone/Delaware Bay/220/1995 0.01 F E H7N9 H7N9 Figure 2

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