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Electronic supplementary material: figures 1, 2 and 3

Electronic supplementary material: figures 1, 2 and 3. ESM Figure 1. Schematics of a jawbone of Ototylomys from the Loltún cave used in this study. The red shaded area, which includes all three molars and mandible bone, corresponds to the fragment used for DNA extraction.

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Electronic supplementary material: figures 1, 2 and 3

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  1. Electronic supplementary material: figures 1, 2 and 3

  2. ESM Figure 1. Schematics of a jawbone of Ototylomys from the Loltún cave used in this study. The red shaded area, which includes all three molars and mandible bone, corresponds to the fragment used for DNA extraction. Diastema distance Alveolar length of molars Length of molars Tooth depth Mandibular foramen Tooth length

  3. ESM Figure 2. Maximum likelihood tree for ancient and modern sequences from Ototylomys phyllotis obtained with PhyMLv3.1. AH are haplotypes from Loltún and H are Ototylomysphyllotishaplotypes from the study of Gutiérrez-García & Vázquez-Domínguez (2012). H90 H89 H87 H84 H85 H83 H82 H81 H78 H79 H60 H59 H58 H52 H53 H69 H42 H63 H71 H65 H66 H67 H61 H74 H76 H77 H73 H75 H72 H56 H57 H55 H54 H50 H51 H49 H46 H47 H45 H44 H42 H41 H40 H36 H33 H34 H35 H32 H31 H38 Ototylomys phyllotis H37 H29 H28 H39 H27 H26 H30 H80 H16 H15 H18 H17 H14 H11 H12 H13 H10 H9 H19 H8 H6 H5 H2 H3 H1 H21 H20 H22 H23 H4 AH5 H24 AH6 H25 Loltún cave AH3 AH2 AH1 AH4 Outgroups 0.2

  4. ESM Figure 3. Demographicresults for the ancient sequences from the Loltún cave (Loltún clade), estimatedby Bayesianskylineplot analysis. Population size (Ne) Time before present (million years ago)

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