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Introduction to 2D NMR

Introduction to 2D NMR. Multipulse techniques. Organic Structure Analysis, Crews, Rodriguez and Jaspars. Organic Structure Analysis, Crews, Rodriguez and Jaspars. ONE-PULSE SEQUENCE. Organic Structure Analysis, Crews, Rodriguez and Jaspars. ONE-PULSE SEQUENCE. (90 o ) x. 1 H. Preparation.

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Introduction to 2D NMR

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  1. Introduction to 2D NMR Multipulse techniques Organic Structure Analysis, Crews, Rodriguez and Jaspars

  2. Organic Structure Analysis, Crews, Rodriguez and Jaspars

  3. ONE-PULSE SEQUENCE Organic Structure Analysis, Crews, Rodriguez and Jaspars

  4. ONE-PULSE SEQUENCE (90o)x 1H Preparation Detection Organic Structure Analysis, Crews, Rodriguez and Jaspars

  5. BASIC LAYOUT OF A 2D NMR EXPERIMENT Preparation Mixing t Evolution t1 Detection t2 Organic Structure Analysis, Crews, Rodriguez and Jaspars

  6. INVERSION-RECOVERY PULSE SEQUENCE (180o)x (90o)x t2 t1 1H Preparation Evolution Detection Organic Structure Analysis, Crews, Rodriguez and Jaspars

  7. INVERSION-RECOVERY PULSE SEQUENCE t1 t1 Organic Structure Analysis, Crews, Rodriguez and Jaspars

  8. SPIN-ECHO PULSE SEQUENCE (90o)x (180o)x t1 t1 t2 13C Prep. Evolution Detection Organic Structure Analysis, Crews, Rodriguez and Jaspars

  9. SPIN-ECHO PULSE SEQUENCE FT gives null signal Organic Structure Analysis, Crews, Rodriguez and Jaspars

  10. 1H-1H COSY (COrrelated SpectroscopY) (90o)x (90o)x t2 t1 1H Preparation Evolution Detection Organic Structure Analysis, Crews, Rodriguez and Jaspars

  11. PROCESSING 2D DATA n is the number of increments Organic Structure Analysis, Crews, Rodriguez and Jaspars

  12. AUTOCORRELATED Homonuclear J resolved 1H-1H COSY TOCSY NOESY ROESY INADEQUATE CROSS-CORRELATED Heteronuclear J resolved 1H-13C COSY HMQC HSQC HMBC HSQC-TOCSY TYPES OF 2D NMR EXPERIMENTS Organic Structure Analysis, Crews, Rodriguez and Jaspars

  13. AUTOCORRELATED EXPERIMENTS – 1H-1H COSY f1=f2=diagonal Gives: Organic Structure Analysis, Crews, Rodriguez and Jaspars

  14. AUTOCORRELATED EXPERIMENTS – 1H-1H COSY Organic Structure Analysis, Crews, Rodriguez and Jaspars

  15. REQUIREMENTS FOR 1H-1H COSY • Number of transients required is half that needed to give decent 1D 1H NMR spectrum • Most of the time we use a ‘double quantum filtered COSY’ (DQF-COSY): • Same information as COSY but removes single quantum transitions (large singlet peaks from Me groups), meaning we can see things closer to the diagonal. Solves problems in case where there is a dynamic range problem (very large and very small peaks in same spectrum) • It is phase sensitive, we acquire 2 x number of increments (real and imaginary). Get coupling information from phases of correlation peaks. Organic Structure Analysis, Crews, Rodriguez and Jaspars

  16. PEAK PICKING FOR 1H-1H COSY COSY DQF-COSY Organic Structure Analysis, Crews, Rodriguez and Jaspars

  17. PEAK PICKING FOR DQF-COSY Organic Structure Analysis, Crews, Rodriguez and Jaspars

  18. TOtal Correlation SpectroscopY (TOCSY) HOmonuclear HArtman-HAhn spectroscopy (HOHAHA) Increasing the mixing time (30 – 180 ms): Organic Structure Analysis, Crews, Rodriguez and Jaspars

  19. TOtal Correlation SpectroscopY (TOCSY) HOmonuclear HArtman-HAhn spectroscopy (HOHAHA) dH dH Organic Structure Analysis, Crews, Rodriguez and Jaspars

  20. TOtal Correlation SpectroscopY (TOCSY)HOmonuclear HArtman-HAhn spectroscopy (HOHAHA) • Like COSY in appearance • Relies on relayed coherence during spin-lock mixing time • The longer tmix, the longer the correlations (30 – 180 ms gives 3 - 7 bonds) • Relays can occur only across protonated carbons – not across quaternary carbons (spin systems) • Very useful for systems containing discrete units eg proteins and polysaccharides Organic Structure Analysis, Crews, Rodriguez and Jaspars

  21. NOESY (Nuclear Overhauser Effect SpectroscopY) ROESY (Rotating Overhauser Effect SpectroscopY) Through-space correlations Up to 5 Å Organic Structure Analysis, Crews, Rodriguez and Jaspars

  22. NOESY (Nuclear Overhauser Effect SpectroscopY) dH MW = 300 Da tmix = 800 ms dH Organic Structure Analysis, Crews, Rodriguez and Jaspars

  23. ROESY (Rotating Overhauser Effect SpectroscopY) dH MW = 800 Da tmix = 300 ms dH Organic Structure Analysis, Crews, Rodriguez and Jaspars

  24. NOESY (Nuclear Overhauser Effect SpectroscopY)ROESY (Rotating Overhauser Effect SpectroscopY) • Give through-space correlations up to 5 Å • The effect relies on molecular size. The NOE effect ~ 0 at 1000 Da. It works well for small molecules (tmix ~ 800 ms) and macromolecules (tmix ~ 100 ms). • In the intermediate range use ROESY with tmix ~ 200-300 ms • Both NOESY and ROESY need long relaxation delays (2 s) • True NOE and ROE peaks are negative. In NOESY can get COSY peaks showing (positive). In ROESY can get TOCSY peaks showing (antiphase). • To determine mixing time do inversion-recovery experiment to find average T1. As a rule of thumb, NOESY tmix = T1/0.7, ROESY tmix = T1/1.4 Organic Structure Analysis, Crews, Rodriguez and Jaspars

  25. INADEQUATE – Incredible Natural Abundance DoublE QUAntum Transfer Experiment 13C-13C Organic Structure Analysis, Crews, Rodriguez and Jaspars

  26. INADEQUATE – Incredible Natural Abundance DoublE QUAntum Transfer Experiment dC dC Organic Structure Analysis, Crews, Rodriguez and Jaspars

  27. INADEQUATE – Incredible Natural Abundance DoublE QUAntum Transfer Experiment • C-C correlation experiment • Relies on two 13C being adjacent. • Chance of 13C-13C = 1/10 000 • Works by suppressing 13C single quantum signal (hence DQ) • Needs signal/noise of 25/1 with 1 transient 13C NMR experiment to get spectrum in 24 h • For compound of 150 Da, need 700 mg in 0.7 mL CDCl3 (~ 6M) • With low volume probes and image recognition software can get away with much smaller samples and poorer signal/noise Organic Structure Analysis, Crews, Rodriguez and Jaspars

  28. HETERO CORRELATED EXPERIMENTS (13C-1H)13C DETECTED • 1H-13C COSY (also called HETCOR). Two types: • Direct correlations (1JCH = 140 Hz) C-H • Indirect (long-range) correlations (2-3JCH = 9 Hz) C-C-H and C-C-C-H • Very insensitive • For J = 140 Hz take 1/3 number of transients needed to get 13C NMR spectrum with S/N = 20/1. If 300 transients for 13C NMR, 2D with 256 increments takes 14 h. • For J = 9 Hz take 1/2 number of transients needed to get 13C NMR spectrum with S/N = 20/1. Needs longer relaxation time (2s). If 300 transients for 13C NMR, 2D with 256 increments takes 32 h. • Outdated Organic Structure Analysis, Crews, Rodriguez and Jaspars

  29. HETERO CORRELATED EXPERIMENTS (13C-1H)1H (INVERSE) DETECTED • Direct correlations (C-H, 1JCH = 140 Hz) obtained from HMQC or HSQC experiment (Heteronuclear Multiple/Single Quantum Coherence) • Indirect (long-range) correlations (C-C-H, C-C-C-H, 2-3JCH = 9Hz) obtained from HMBC experiment (Heteronuclear Multiple Bond Correlation). Set JCH to other values for certain systems. • These experiments are 1H detected and have inherent sensitivity advantage (gH = 4gC) Chance of 13C-1H is 1/100 • With pulsed field gradients (PFG), it is possible to run 2D heterocorrelated experiments with single transients and 256 increments in 8-15 minutes! • Without PFG need to phase cycle to remove artefacts. (4 transients minimum: t = 30 min; but 64 for full phase cycle: t = 9h). Organic Structure Analysis, Crews, Rodriguez and Jaspars

  30. HMQC Absolute value Half the resolution of an HSQC Can alter pulse sequence to get HMBC HSQC Phase sensitive Double the resolution of an HMQC Can edit to get positive peaks for CH, CH3 and negative peaks for CH2. HSQC versus HMQC Organic Structure Analysis, Crews, Rodriguez and Jaspars

  31. HSQC – Heteronuclear Single Quantum Coherence 1JCH = 140 Hz; C-H direct correlations (1 bond) Organic Structure Analysis, Crews, Rodriguez and Jaspars

  32. HSQC – Heteronuclear Single Quantum Coherence Organic Structure Analysis, Crews, Rodriguez and Jaspars

  33. Edited HSQC – Heteronuclear Single Quantum Coherence CH3 CH2 CH Organic Structure Analysis, Crews, Rodriguez and Jaspars

  34. HMBC – Heteronuclear Multiple Bond Correlation 2-3JCH = 9 Hz; C-H indirect (long range) correlations (2-3 bonds) C-C-H & C-C-C-H Organic Structure Analysis, Crews, Rodriguez and Jaspars

  35. HMBC – Heteronuclear Multiple Bond Correlation Organic Structure Analysis, Crews, Rodriguez and Jaspars

  36. 3D Experiments – HSQC-TOCSY Mixing time 30-180 ms 3-7 bonds Organic Structure Analysis, Crews, Rodriguez and Jaspars

  37. 3D Experiments – HSQC-TOCSY Organic Structure Analysis, Crews, Rodriguez and Jaspars

  38. 3D Experiments – HSQC-TOCSY • 3D experiment condensed into 2D. • Concatenation of HSQC and TOCSY pulse sequences • Sorts TOCSY correlations in spin system according to carbon chemical shift – increases resolution of TOCSY by adding 13C dimension • See direct (C-H) correlations as in HSQC, and long range correlations within spin systems depending on mixing time (30 – 180 ms, 3 – 7 bonds). Can’t go across quaternary C or heteroatom as it the TOCSY effect needs protons. • Very effective for modular systems with separate spin systems such as polysaccharides and peptides. Organic Structure Analysis, Crews, Rodriguez and Jaspars

  39. General procedure for running 2D spectra • Insert sample, tune 1H and 13C channels • Lock and shim (determine 90o pulse width) • Acquire 1H NMR spectrum • Change spectral window to ± 1 ppm of spectrum • Re-acquire 1H spectrum • Phase spectrum, apply baseline correction • Acquire 13C spectrum in optimum spectral window • Call up macro for 2D experiment. Use 1H and 13C parameters for 2D experiments • Alter number of transients, number of increments to fit the time available • Repeat steps 8 & 9 for other 2D experiments required • Set experiments running Organic Structure Analysis, Crews, Rodriguez and Jaspars

  40. Processing 2D spectra – Phase sensitive experiments (DQF-COSY, TOCSY, NOESY, ROESY, HSQC, HSQC-TOCSY) • Fourier transform the first increment • Apodise t2 using shifted sine bell squared • Fourier transform t2 f2 using apodisation function in 2. • Apodise t1 using shifted sine bell squared • Fourier transform t1 f1 using apodisation function in 4. • Phase spectrum in both dimensions if necessary Organic Structure Analysis, Crews, Rodriguez and Jaspars

  41. Processing 2D spectra – Absolute value experiments (COSY, HMBC) • Fourier transform the first increment • Apodise t2 using sine bell • Fourier transform t2 f2 using apodisation function in 2. • Apodise t1 using sine bell • Fourier transform t1 f1 using apodisation function in 4. • No phasing necessary Organic Structure Analysis, Crews, Rodriguez and Jaspars

  42. APODISATION - Phase sensitive experiments APODISATION - Absolute value experiments Organic Structure Analysis, Crews, Rodriguez and Jaspars

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