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Lab Meeting Presentation. Evan Keibler 8-27-03. Coalescence Points. Procedure. Original plan: Keep track of number of live nodes Search when number of live nodes falls below some threshold Current method: Search when 50,000 bases from last cpoint.
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Lab Meeting Presentation Evan Keibler 8-27-03
Procedure • Original plan: • Keep track of number of live nodes • Search when number of live nodes falls below some threshold • Current method: • Search when 50,000 bases from last cpoint. • If not found wait 5,000 then search again
Cpoint Separation • Average over 44 500kb sequences • Number of Segments: 6.27 • Average Distance between cpoints: 63000 • Standard deviation of cpoint distances: 98000 • Last cpoint: 309000 • 8 sequences with no cpoint (18%)
Cpoint separation • Average over 242 1MB sequences • Number of Segments: 13.77 • Average Distance between cpoints: 62000 • Standard deviation of cpoint distances: 127000 • Last cpoint: 709000 • 35 sequences with no cpoint (14%)