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The Structure and Function of Macromolecules. Chapter 5 AP Biology. Polymer Principles. Very large molecules = macromolecules Most macromolecules are polymers chains of identical or similar building blocks—monomers. Polymer Principles, continued. Formation: Condensation Reactions
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The Structure and Function of Macromolecules Chapter 5 AP Biology
Polymer Principles • Very large molecules = macromolecules • Most macromolecules are polymers • chains of identical or similar building blocks—monomers
Polymer Principles, continued • Formation: Condensation Reactions • monomers to polymers • water is released—dehydration • Disassembly: Hydrolysis—requires H2O
Polymer Principles, continued • Various polymers are built from a small set of monomers • Each class of polymer: • formed from a specific set of monomers • Limited monomer types • Unique arrangements possible • Due to specific arrangement of monomers into polymers.
Monomer Characteristics • Very small • Mostly soluble in water • Pass in/out of cells easily • some organisms (autotrophs) synthesize monomers • other organisms get monomers from "food" (heterotrophs)
Monomer-Polymer Characteristics • Monomer-polymer pattern • extremely efficient and flexible • Few monomers needed • less than 30 common monomers in cells • Thousands of kinds of polymers made
Polymer Characteristics • Polymer diversity results from: • Different monomer used • Different sequence of monomers • e.g English alphabet and different words possible • Different patterns of branching: • glycogen is more branched than starch • Polymers can be broken down into monomers and re-used to make different polymers—cellular recycling.
Polymer Characteristics Summary • Extremely largedo not enter or leave cells except by special mechanisms. • Synthesized by condensation reactions (dehydration synthesis) • Broken down by hydrolysis (digestion) • Great diversity possible from only a few kinds of monomers • Cellular recycling—monomer subunits reused to make different polymers
Organic Compounds • Four major classes in cells (Note: cells are the basic unit of life): • Carbohydrates • Lipids • Proteins • Nucleic Acids
Carbohydrate Protein Lipid Examples of Organic Molecules
Examples of Organic Molecules, continued • Nucleic Acid (building block: nucleotide—nitrogen base, phosphate group, and sugar)
Formation of Polymers • Joining monomers to each other • Series of chemical reactions • To form long chain molecules • Formation reaction: • condensation reaction or • dehydration synthesis reaction
CARBOHYDRATES--FUEL AND BUILDING MATERIAL • Sugars: smallest carbohydrates • “Fuel” and carbon sources • Monosaccharides—simplest carbohydrates • Used directly for fuel • Converted to other types of organic molecules • Used as monomers for polymers. • Disaccharides: • Two monosaccharides • Connected by a glycosidic linkage
Polysaccharides • Polysaccharides • Polymers of sugars • Have storage and structural roles • Monosaccharide monomers of polysaccharides connected by glycosidic linkages • Starch (plants) and glycogen (animals): • storage polymers of glucose. • Cellulose: • important structural polymer of glucose • in plant cell walls. • Starch, glycogen, and cellulose differ in the positions and orientations of their glycosidic linkages.
LIPIDS--DIVERSE HYDROPHOBIC MOLECULES • Fats store large amounts of energy • Fats (triacylglycerols) • Glycerol molecule joined to three fatty acids • Dehydration reactions • Saturated Fatty Acids: • Have maximum number of hydrogen atoms • Unsaturated Fatty Acids (in oils) • Have one+ double bonds in hydrocarbon chains.
Lipids, continued • Phospholipids • Major components of cell membranes • Contrast with fats--no third fatty acid linked to glycerol • Have a negatively charged phosphate group • may be joined to another small hydrophilic molecule • “Head" of phospholipid is hydrophilic.
Lipids, continued • Steroids • Cholesterol • Certain hormones—progesterone, testosterone, estradiol • Steroids have basic four fused rings of carbon atoms structure.
PROTEINS--MANY STRUCTURES, MANY FUNCTIONS • Protein • One or more polypeptide chains • Folded into a specific three-dimensional conformation
Polypeptides • Polymer of amino acids • Connected in a specific sequence • Constructed from 20 different amino acids (aa) • Each aa has characteristic side chain (R group). • Carboxyl and amino groups of adjacent aa link together (peptide bonds)
Protein Function and Structure • Function linked to conformation • Primary Structure = unique sequence of aa • Secondary Structure = folding or coiling into repeating configurations • Mainly helix and b pleated sheet • Due to hydrogen bonding of parts of polypeptide backbone.
Protein Structure, continued • Tertiary Structure = overall three-dimensional shape of polypeptide • Due to aa side chain interactions • Proteins of more than one polypeptide chain (subunits) have a quaternary level of structure. • Structure and function of protein are sensitive to physical and chemical conditions. • Protein shape: ultimately determined by primary structure, but in the cell, proteins called chaperonins may help the folding process.
NUCLEIC ACIDS--INFORMATIONAL POLYMERS • Nucleic acids: store and transmit hereditary information • DNA stores info for protein synthesis • RNA (specifically, mRNA) carries genetic info to protein-synthesizing machinery.
Nucleic Acid Strands • Polymer of nucleotides • Each nucleotide monomer = pentose covalently bonded to a phosphate group and to one of four different nitrogenous bases (Adenine, Guanine, Cytosine, and Thymine or Uracil). • RNA has ribose as its pentose; • DNA has deoxyribose. • RNA has U and DNA has T
Nucleic Acid Strand Formation • Nucleotides join and form a sugar-phosphate backbone • Nitrogenous bases project from backbone • Sequence of bases along a gene specifies aa sequence of a particular protein
Nucleic Acids and Inheritance • Inheritance: based on replication of the DNA double helix • DNA: helical, double-stranded macromolecule with bases projecting into the interior of the molecule. • A always hydrogen-bonds to T • C always hydrogen-bonds to G • Nucleotide sequences of the two strands are complementary.
DNA and Evolution • DNA and proteins useful for evolution measures. • Molecular comparisons help biologists sort out the evolutionary connections among species.
Quiz • What kind of chemical reaction is needed to form a polymer from individual monomers? __________________ • What kind of reaction is needed to break a polymer into its constituent monomers? ______________ • What are the monomers needed to build sucrose? _____________
4. What is starch? _______________ 5. What is glycogen? _____________ 6. What kind of chemical bond is responsible for the secondary structure of proteins? ___________ 7. What determines the primary structure of proteins? ___________ 8. All proteins contain carbon, hydrogen, oxygen and what other element? ______