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Raw Illumina reads FASTQ. Exome / genome re-sequencing. Quality control (QC). Filtering. Mapping. Reference annotation. Call variants. Annotate & filter variants. Raw Illumina reads FASTQ. Quality control (QC). Filtering. Mapping. Call variants. Annotate & filter variants.
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Raw Illumina reads FASTQ Exome / genome re-sequencing Quality control (QC) Filtering Mapping Reference annotation Call variants Annotate & filter variants
Raw Illumina reads FASTQ Genome de novo assembly Quality control (QC) Filtering Assemble draft contig Validate Assemble draft scaffold Validate Release
Sample Raw Illumina RNASeq FASTQ Indexed Reference Genome FASTA RNA-Seq Quality control (QC) Filtering Mapping Estimate expression Detect differential expression