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EMBRACE Workshop

Join the Embrace Workshop at ITB-CNR Bari to explore the latest in gene ontology, comparative genomics, and gene family evolution. Learn about algorithms and software for genome analysis, identification of P53 gene family target genes, and more. This workshop, led by experts in the field, will cover a range of specialized databases and tools for bioinformatics research.

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EMBRACE Workshop

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  1. EMBRACE Workshop Appled Gene Ontology ITB – CNR Bari, Italy 7. – 9. November 2007 Domenica D’Elia, Giulia De Sario, Andreas Gisel, Cecilia Saccone, Angelica Tulipano

  2. GRID RESEARCH SPECIALIZED DATABASES ITB Bari ALGORITHMS AND SOFTWARE FOR GENOME ANALYSIS COMPARATIVE GENOMICS AND EVOLUTION OF GENE FAMILIES IDENTIFICATION OF P53 GENE FAMILY DIRECT TARGET GENES BY IN SILICO AND MICROARRAY APPROACHES Institute of Biomedical Technologies (ITB) – Bari, CNR The main research projects of ITB are focused on: MOLECULAR BIODIVERSITY AND DNA BARCODE

  3. EMBRACE European Model for Bioinformatics Research and Community Education The aim is to enable bioinformatics research through better interoperability of servers, database, and services. Network of Excellence Work packages Content Integration Integration of the major databases such as EMBL, SwissProt, TrEMBL, PDB, ArrayExpress, GO, GOA and specific DBs developed by members Tool Integration Integration of bioinformatics tools such as BLAST, MultiBLAST, EMBOSS, and specific tools provided from the community Technology assessment and adoption Assessing the middleware solutions available and the IT trends such as Grid Computing Test-problems In close collaboration with experimental laboratories to test and prove the Network Outreach

  4. Final programme Wednesday 7. November 2007 Introduction Cecilia Saccone ITB-CNR, Bari, Italy Ontology: An Introduction Claudia d'Amato Department of Informatics, University of Bari, Italy Gene Ontology Midori Harris EBI, Hinxton, GB GOA: Looking after GO annotations Emily Dimmer EBI, Hinxton, GB (UniProt GOA project) Insight into GO and GOA Andreas Gisel ITB-CNR Bari, Italy GO Browsers: AmiGO Erika Feltrin CRIBI, University of Padova, Italy Thursday 8. November 2007 Gene Analogue Finder Angelica Tulipano / Giulia De Sario INFN Bari, Italy / ITB-CNR Bari, Italy GO Annotation tools: GoPubMed Andreas Doms Biotech TU Dresden, Germany GO Microarray tools: GOToolBox David Martin Genome bioinformatics lab, Center for Genomic Regulation, Barcelona, Spain Friday 9. November 2007 GO Other tools: Blast2GO Ana Conesa Bioinformatics Department,Centro de Investigacion Principe Felipe, Valencia, Spain Collaborative tagging for GO Domenico Gendarmi Department of Informatics, University of Bari, Italy Final Discussion

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