1 / 18

The Process

The Insecticide Resistance Section Of The PopBio Database Emmanuel Dialynas IMBB/FORTH, Greece 18 July 2013. The Process. Data collection & recording Submission - Curation Presentation. What can be recorded?. Ιnsecticide & concentration Synergist & concentration Assay method.

nimrod
Download Presentation

The Process

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. The Insecticide Resistance Section Of The PopBio DatabaseEmmanuel DialynasIMBB/FORTH, Greece18 July 2013

  2. The Process Data collection & recording Submission - Curation Presentation

  3. What can be recorded? Ιnsecticide & concentration Synergist & concentration Assay method Investigator Food state Catch method Images/Photographs Anatomy parts Species identification method Collection period Sample sex Geolocation & coordinates Publication data Sample size Environmental conditions & factors

  4. What results can be recorded? Enzymatic activity - Inhibition rate Permeability Mortality percentage KDT Protein absorbance Mutation frequency Lethal dose Resistance mechanism Disease transmission Variation Lethal concentration

  5. Data collection and recording tools • Spreadsheet (Libre Office, Excel, Google Docs) • ISA-tools & ISA-tab. Desktop applications, standardized output. • Android mobile application and web interface in development.

  6. Data collection and recording tools: Spreadsheets Most familiar. Easy to add extra fields. Data cannot be fully validated. Libre Office, Excel Work offline. Hard to collaborate. Frequent backup. Google Docs Integrated collaboration. Less frequent backups. Ontology assistant. Easier to get feedback/ support from Curator. Internet conn. required.

  7. Data collection and recording tools: ISA-tools Form driven data entry Offline and online Most fields can be validated Ontology assistant Standardized output Frequent backups required Adding fields can be complicated No built in collaboration mechanism

  8. Data collection and recording tools: Android application Recording data on the spot Process automation Date, time, location validation Built in image capturing Online/offline + + Date, time, coordinates PopBio

  9. Data collection and recording tools: Web interface Online data entry Full data validation Ontology assistant Built in collaboration Offline

  10. Data collection and recording tools: Web interface

  11. Data searching & presenting • Geolocation • Year • Species • Insecticide • Catch method • Insecticide • Assay method • Result

  12. Data searching & presenting Data provided by ANVR

  13. Data searching & presenting All Anopheles arabiensis collections All collections in year 2000 Data provided by ANVR

  14. Data searching & presenting All insecticides - all species - all years Data provided by ANVR

  15. Data searching & presenting Mortality rates in permethrin assay >95% <=95% Data provided by ANVR

  16. Data searching & presenting Lethal time 50 (LT50) in samples from Cameroon and Ghana

  17. Giving Back To The Community • Training • Continuous support • IRbase installation at MRTC (Bamako, Mali) for WHO-AFRO

  18. http://www.vectorbase.org info@vectorbase.org Special thanks to: WHO-AFRO, ANVR Janet Hemingway, Louise Kelly Hope, Clare Strode Hillary Ranson, Joseph Burrhani Funded by:

More Related