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A Resource For Stem Cell Researchers and Extensible Platform For Biomedical Web Communities

A Resource For Stem Cell Researchers and Extensible Platform For Biomedical Web Communities. Lisa Girard 1 , Sudeshna Das 2 , Stephane Corlosquet 2 , Paolo Ciccarese 2 , Timothy W. Clark 2 , and Brock Reeve 1 1 Harvard Stem Cell Institute, Cambridge, MA 02138

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A Resource For Stem Cell Researchers and Extensible Platform For Biomedical Web Communities

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  1. AResource For Stem Cell Researchers and Extensible Platform For Biomedical Web Communities Lisa Girard1, Sudeshna Das2, Stephane Corlosquet2, Paolo Ciccarese2, Timothy W. Clark2, and Brock Reeve1 1Harvard Stem Cell Institute, Cambridge, MA 02138 2 MIND Informatics, Massachussetts General Hospital, Cambridge MA 02140

  2. StemBook is an online review of stem cell biology, published by the HSCI and created in collaboration with the MGH MIND Informatics group • Freely available, open access • Invited, peer reviewed content • International group of authors • and editorial board members • Content, pipeline, platform

  3. Chapters • Chapters in StemBook • divided into sections • (left) • Over 60 chapters • Update cycle

  4. Editorial Process StemBook Editorial and Publication Pipeline Editor Author(s) Peer Reviewers Author(s) Editor Data Conversion +PMID, doi

  5. PubMed NCBI Bookshelf

  6. Forums Forums

  7. Commentary

  8. Protocols • Collaboration with NIHCRM and • core facility network • Expansion via invitation and user • Upload, subsequent core validation

  9. Text Mining and Chapter Annotation Annotation of chapters using DOMEO (www.annotationframework.org) • Proteins, biological processes, cell types/lines, and hypotheses/claims in • articles annotated with controlled vocabulary/ontology terms. • Readers can can search for a term of interest and can retrieve the • articles as well as the relevant context within the article.

  10. Community Involvement Members

  11. StemBook Platform - First in SCF Ecosystem • Science CollaborationFramework (SCF) • Reusable platform for developing scientific communities • Developed using an open source CMS - Drupal • Features include:Scientific articles, protocols, news, forums • journal stream and membership profiles • • Key sites:StemBook,Pain Research Forum, MS Discovery Forum

  12. SCF Ecosystem- Extensible Platform for Biomedical communities StemBook Pain Research Forum MS Discovery Forum

  13. Acknowledgements BTPDF2 Organizers, Force 11 Tim Clark, Sudeshna Das, StephaneCorlosquet, Paolo Ciccarese MGH Biomedical Informatics Core, MIND Informatics, MGH Harvard Stem Cell Institute Generosity of the NIHCRM, Anonymous Foundation

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