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2. Muscular dystrophy (MD) . a group of rare inherited muscle diseases muscle fibers are unusually susceptible to damageMuscles, primarily voluntary muscles, become progressively weakerIn some types of muscular dystrophy, heart muscles, other involuntary muscles and other organs are affected. 3
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1. 1 Muscular dystrophy Dr. Derakhshandeh
2. 2 Muscular dystrophy (MD) a group of rare inherited muscle diseases
muscle fibers are unusually susceptible to damage
Muscles, primarily voluntary muscles, become progressively weaker
In some types of muscular dystrophy, heart muscles, other involuntary muscles and other organs are affected
3. 3 voluntary & in voluntary muscles
4. 4 Duchenne's muscular dystrophy (Xp21.2) The types of muscular dystrophy:
a genetic deficiency of the protein dystrophin :
dystrophinopathies
Duchenne's muscular dystrophy :
the most severe form of dystrophinopathy.
It occurs mostly:
in young boys
5. 5 Dystrophin a large (427 kD) cytoskeletal protein
structure with an actin-binding domain at the amino terminus (N)
The carboxy-terminal domains associate with a large transmembrane complex of glycoproteins
directly bind with elements of the extracellular
Dystrophin: likely plays a critical role in establishing connections between the internal, actin-based cytoskeleton and the external basement membrane
Its absence may lead to increased membrane fragility
6. 6 Dystrophin
7. 7 Duchenne's muscular dystrophy
Difficulty getting up from a lying or sitting position
Weakness in lower leg muscles, resulting in difficulty running and jumping
Waddling gait
Mild mental retardation, in some cases
8. 8 Waddling gait
9. 9 In the late stages of muscular dystrophy, fat and connective tissue often replace muscle fibers.
10. 10
11. 11 DMD
12. 12 Orthopaedic management of patients with Duchenne's muscular dystrophy
13. 13 Duchenne's muscular dystrophy X-linked inheritance Prevalence 0.003-0.05/1,000 total
Signs and symptoms of Duchenne's usually appear between the ages of 2 and 5
It first affects the muscles of the pelvis, upper arms and upper legs.
By late childhood, most children with this form of muscular dystrophy are unable to walk.
14. 14 Most die by their late teens or early 20s, often from pneumonia, respiratory muscle weakness or cardiac complications.
Some people with Duchenne's MD may exhibit curvature of their spine (scoliosis).
15. 15 Becker's muscular dystrophy This type of muscular dystrophy is a milder form of dystrophinopathy.
It generally affects older boys and young men, and progresses more slowly, usually over several decades.
Signs and symptoms of Becker's MD are similar to those of Duchenne's.
The onset of the signs and symptoms is generally later, from age 2 to 16.
16. 16 Multiplex PCR imagesIranian J Publ Health, Vol. 32, No. 3, pp.47-53, 2003 S Kheradmand kia , DD Farhud , S Zeinali , AR Mowjoodi, H Najmabadi ,F Pourfarzad, P Derakhshandeh-Peykar
17. 17
18. 18
19. 19
20. 20 MLPA
Multiplex Ligation-dependent Probe Amplification
21. 21 MLPA
22. 22 MLPA analysis of the human DMD-gene in a normal male
23. 23 Agarose-gel analysis of DMD deletion patient
24. 24 The MLPA reaction & five major steps 1) DNA denaturation and hybridisation of MLPA probes
2) ligation reaction
3) PCR reaction
4) separation of amplification products by electrophoresis
5) data analysis
25. 25 The MLPA reaction I first step: the DNA is denatured and incubated overnight with a mixture of MLPA probes
MLPA probes consist of two separate oligonucleotides, each containing one of the PCR primer sequences
The two probe oligonucleotides hybridize to immediately adjacent target sequences
Only when the two probe oligonucleotides are both hybridised to their adjacent targets can they be ligated during the ligation reaction
only ligated probes will be exponentially amplified during the subsequent PCR reaction
26. 26 The MLPA reaction II the number of probe ligation products is a measure for the number of target sequences in the sample
The amplification products are separated using capillary electrophoresis
Probe oligonucleotides that are not ligated only contain one primer sequence. As a consequence, they cannot be amplified exponentially and will not generate a signal.
The removal of unbound probes is therefore unnecessary in MLPA and makes the MLPA method easy to perform.
27. 27 Advantages of MLPA methods which were primarily developed for detecting point mutations, such as sequencing and DHPLC (denaturing
high-performance liquid chromatography), generally fail to detect copy numbers changes
Southern blot analysis, will not always detect small deletions and is not ideal as a routine technique
comparing MLPA to FISH, MLPA not only has the advantage of being a multiplex technique, but also one in which very small (50-70 nt) sequences are targeted
Moreover, MLPA can be used on purified DNA
The over 300 probe sets now available are dedicated to applications ranging from the relatively common (Duchenne, DiGeorge syndrome, SMA)
28. 28 MAPH
Multiplex Amplifiable Probe Hybridisation
29. 29 MAPH Detection of deletions/duplication mutations in Duchenne Muscular Dystrophy using: MAPH
30. 30 MAPH Although ~95% of deletions can be detected in males using multiplex PCR
other methods must be used to determine duplications, as well as the carrier status of females
The most commonly applied methods are quantitative multiplex PCR and quantitative Southern blotting
31. 31 MAPH Using high-quality Southern blots it is possible to perform a quantitative analysis and detect duplications
this technique is time consuming
it is difficult to exactly determine the duplication
it can be difficult to detect duplications in females and triplications will be missed
Armour et al (Nucl.Acids Res. 2000)
32. 32 system for analyzing all 79 exons of the DMD gene for deletions and duplications
MAPH is based on a quantitative PCR of short DNA probes recovered after hybridization to immobilized genomic DNA
33. 33
34. 34 1 ug of denatured genomic DNA is spotted on a small nylon filter
hybridized overnight in a solution containing one of the probe mixes
Following stringent washing the next day the filter is placed in a PCR tube
and a short PCR reaction is performed
This releases the specifically-bound probes into the solution
An aliquot of this is transferred to a second, quantitative PCR reaction
35. 35 alterations can be examined by using a set of short probes (140-600 bp)
After washing and PCR the differently sized products resolved and quantified measured
The amount of probe amplified depends on the number of hybridising targets and therefore on the copy number of the corresponding locus in the test DNA
36. 36
37. 37 MAPH dystrophin probe sets A/B: The two probes sets encompassingall exons in normal individuals
38. 38 A relative comparison is made between the band intensities or peak heights
39. 39
40. 40 Outline of the MAPH technique
41. 41
42. 42 Analysis of exon products on a micro-arrayPCR-fragments containing DMD exons are spotted in triplicate on each array
43. 43 Applications areas such as cancer risk (BRCA1 and HNPCC)
learning disability (US: "mental retardation")
muscular dystrophy (DMD/BMD) neuromuscular disorders (SMA)
44. 44 db-Thalassemia
45. 45 Understanding globin regulation in ß-thalassemia:it’s as simple as a, ß, ?, d Arthur Bank
The Journal of Clinical Investigation http://www.jci.org Volume 115 Number 6 June 2005
46. 46 The human globin loci The best characterized in the human genome at the gene and protein levels
The ß–locus control region (ß-LCR):
A dominant control region located upstream of the globin structural genes
a strong enhancer of the expression of the downstream
47. 47 . The human globin locus and their role in ß-thalassemia(A) The ß-LCR and structural genes (e, G?, A?, d, and ß) in the ß-globin locus on chromosome 11
48. 48 The major genes expressed throughout fetal life The a-globin gene
2 ?-globin genes, G? and A?
49. 49
50. 50 (B) The a-globin locus is shown with the ?- and 2 a-globin genes on chromosome 16
51. 51 b-Globin gene expression
between cis-acting sequences:
The ß-LCR
trans-acting factors:
including transcription factors
52. 52 C) In early fetal life, the a- and ?-globin chains combine to form HbF (a2?2), the main ß-globin–like globin during the remainder of fetal life and early postnatal life
53. 53 In fetal life
54. 54 In Adult life
55. 55
56. 56 The current therapy for ß-thalassemia Blood transfusions + iron Chelation
Decreasing a-globin accumulation
and/or reactivating ?-globin production
BM transplantation
57. 57 Decreasing excess a-globinaccumulation Unequal crossing over in meiosis:
deletion of the a-globin gene
reduces a-globin synthesis in patients
Homozygous for ß-thalassemia (Major) + decreases the a-globin excess
>>
decreased severity of anemia
58. 58 Increasing human ?-globinexpression reduce anemia and cure human ß-thalassemia
increase in human ?-globin gene expression
>> restoration of HbF
Point mutations in the ?-globin gene promoter:
increase ?-globin expression, but not by agreat amount
59. 59 Hereditary persistence of fetal hemoglobin (HPFH) express ?-globin genes at the same level in adult life as in fetal life
Some HPFH homozygotes have only HbF (a2g2) and no anemia!
60. 60 Doesn't cause any health problem HPFH / ?Thalassemia (no problem)
HPFH / HPFH
61. 61 HPFH as a dß-globin Disease Large deletions at the ß-globin locus
from the region close to the human A? gene to well downstream of the human ß-globin
gene and including deletion of the structural d- and ß-globin genes
62. 62 HPFH Heterozygotes:
a normal level of HbA2
even higher levels of HbF (15 to 30 %)
Homozygotes:
clinically normal
albeit with reduced MCV and MCH
Compound heterozygotes with b thalassemia:
clinically very mild
63. 63
64. 64 HPFH group of disorders
characterized by a decreased or absent:
b-chain synthesis
a variable compensatory increase in g-chain synthesis
65. 65 Intergenic ?d sequences: ?-globin gene regulation Corfu:
homozygous for the Corfu deletion
a deletion of 7.2 kb DNA
upstream of the d-globin
homozygotes were shown to possess 88%-90% HbF
only mild anemia
Did not require blood transfusion
66. 66 Corfu deletion
67. 67 Molecular diagnosis of haemoglobin disordersClin. Lab. Haem. 2004, 26, 159–176B. E. CLARK, S. L. THEINDepartment of Haematological Medicine, King’s College Hospital and GKT School of Medicine,Denmark Hill, London, UK
68. 68 The beta locus on chromosome 11 p15.4 with the e,Gg and Ag, d and b genes, arranged in the order of their developmental expression
69. 69 Gap-PCR db-thalassaemias:
the common HPFH
Hb Lepore
-a Thalassemia, …
70. 70
71. 71
72. 72 Homozygosity for nondeletion db0 thalassemia resulting in a silentclinical phenotype BLOOD, 1 SEPTEMBER 2002 VOLUME 100, NUMBER 5
Renzo Galanello, Susanna Barella, Stefania Satta, Liliana Maccioni, Carlo Pintor, and Antonio Cao
73. 73 Nondeletion Sardinian db0 thalassemia a homozygous state for nondeletion Sardinian db0 thalassemia
a symptomless clinical phenotype with
pattern (Hb F: 99.8% and Hb A2: 0.2%)
74. 74 The molecular defects the presence of 2 nucleotide substitutions:
-196C>T in the promoter of the Ag-globin gene
39C>T nonsense mutation in b-globin gene
75. 75
76. 76 The absence of typical thalassemia clinical findings high Hb F output: which compensated for the absence of chains
The near absence of Hb A2:
alterations in the globin gene transcriptional :
Activation of g-globin genes
and suppression of d-globin genes
or preferential survival of red blood cells with the highest Hb F
and low Hb A2 level
77. 77 The absence of typical thalassemia clinical findings The imbalance in the ratio of a to g
similar to that in heterozygous thalassemia
explains the reduction in MCV
mean corpuscular Hb
78. 78 Patient with nondeletion homozygous db0 thalassemia Had almost no HbA2 (0.3%)
the suppressive effect of the in cis Ag -196CT mutation
This suppressive in cis effect has already been reported for similar mutations, such as the -202 Gg HPFH