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ISCB Student Council and the Regional Student Group Korea

ISCB Student Council and the Regional Student Group Korea. Sungsoo Kang & Joshua Yang Korean BioInformation Center. ISCB Student Council (SC). Established in 2004 Officially approved in 2004, ISMB/ECCB Glasgow VISION To become the leading student organization in computational biology

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ISCB Student Council and the Regional Student Group Korea

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  1. ISCB Student Council and the Regional Student Group Korea Sungsoo Kang & Joshua Yang Korean BioInformation Center

  2. ISCB Student Council (SC) • Established in 2004 • Officially approved in 2004, ISMB/ECCB Glasgow • VISION • To become the leading student organization in computational biology • MISSION • To develop the next generation of computational biologists

  3. Achievements of the ISCB student council • Event ambassador of ‘The Source Event’ • a science career event organized by Nature Jobs and London First • http://www.thesourceevent.com/ • BioSysBio conference • an international conference aimed at students, post-docs and junior faculty working in biotechnology • Opened ‘quick fire’ session to give 1 minute to everyone willing to introduce their work • Mentioned as an example of student-run conference • In PLoS Comp Biol and Nature Reviews Genetics • Student council symposium • ECCB 2005 (1st ), ISMB 2006 (2nd), and ISMB/ECCB 2007 (3rd)

  4. Benefits of the student council membership • Access to a worldwide network of computational biologists • Contacts with world leading scientists and • Contacts with industry and get internship information • Opportunity to participate in council activities • Organization of local regional student groups • Economic benefits • Discounts to attend internationally recognized conferences (e.g. ISMB) • Reduced subscription rates for leading scientific journals

  5. Status of the ISCB student council • 425 student members • Jun 7, 2007 • 16 student council leaders • Highly committed and motivated • Volunteering their time to expand own initiatives • Development and management of projects • 6 regional student groups (RSGs) • India, Singapore, Canada, Africa, Denmark, and Korea

  6. Computational biology (bioinformatics) in Korea • >9 institutes with graduate program and >45 research laboratories • in the field of computational biology and bioinformatics • Two domestic bioinformatics journals • Genomics & Informatics • Bioinformatics and Biosystems • Korean bioinformatics society

  7. Regional Student Group (RSG) Korea • Established in July, 2007 • Advisor: Dr. Jong Bhak (KOBIC) • Student leader: Joshua Yang (UST/KOBIC) • Mission • Enhancing communication and sharing culture in performing bioinformatics under the first principle of conducting scientific research

  8. Projects of RSG Korea • BioPeople • To collect information on biologist-related entities • BioPipeline • To share modular bioinformatics protocols • BioWiki • To share open-free bio-information • BioMoodle • To share educational resources related to biology • Other student group projects

  9. BioPeople project • Collection and visualization of biologist-related entities and their relationship in scientific literature • Social network of biologists based on co-authorship • Projection of hot topics in current research and prediction of future trends • Generation of research profile for a biologist by tracing his/her academic publications • Overall statistics and analysis on biologist-related entities • Principal investigator: Joshua Yang

  10. Illustration of BioPeople Citation Network Research field network World-wide map displaying work places Paper Co-authorship Network Overall statistics and analysis Molecular biology Human Genome Project SNP Research profiles for a biologist

  11. BioPipeline project • Provides easy-to-reuse modular bioinformatics protocols to solve some bioinformatic tasks • Develop and update new bioinformatics protocols • Sponsored by KOBIC • Integrates ~1500 public web services • Provided by KEGG, DDBJ, EMBOSS, EBI, and etc. • Support custom modules developed with programming languages • Such as Java, Python, Perl, Groovy, R, and etc.

  12. Illustration of BioPipeline ~1500 web services

  13. BioWiki project • Provides open-free online wiki sites to share biological knowledge • Wiki • Collaborative website directly edited by anyone with access to it (e.g. Wikipedia) • Supports ‘WYSIWYG’ editing nowadays • Example websites • BioPedia, BioSpecies, BioStructure, BioHongKong, and etc.

  14. BioWiki websites

  15. BioMoodle project • Biological education site for creating effective online learning communities • Sharing free and open teaching materials including documents and multi-media files • Scale from single-teacher site to 40,000-student university • http://biomoodle.org/ • Moodle system • Course management system • Free, open source software package • http://moodle.org/

  16. BioMoodle web interfaces

  17. Future plan of RSG Korea • Recruiting more student members • Developing more creative and interesting group projects • Conducting the first workshop of RSG Korea

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