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Lab Meeting Dec. 20 2009

Lab Meeting Dec. 20 2009. Works since the last meeting (Dec. 14 2009). 1. Prepared for the committee meeting - made powerpoint slides - manuscripts 2. Prepared PAG meeting - modified some of GDR pages unigene, voting forms and some of CGIs 3. After PAG

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Lab Meeting Dec. 20 2009

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  1. Lab MeetingDec. 20 2009

  2. Works since the last meeting (Dec. 14 2009) 1. Prepared for the committee meeting - made powerpoint slides - manuscripts 2. Prepared PAG meeting - modified some of GDR pages unigene, voting forms and some of CGIs 3. After PAG - add direction of features on tracks (temporally) - removed all buttons in HTML tag. created all buttons in SVG http://www.bioinfo.wsu.edu/cgi-bin/gdr/apl/apl.cgi Taein Lee mainlab

  3. e-value high low Suggested functions(from the committee meeting) • save track order • copy all features on an evidence track to the custom track* • add sequence length - show the length of a sequence in task and SVG info. Dialogs. - added a function to validate input sequence for FASTA format • show alignments ** • highlight sequence** • add a filtering function on tracks. Each track has different filters (ex) EST track set threshold on evalue/score/identity • add color schema for each track. (ex) features on EST track Taein Lee mainlab

  4. works needed to be done soon • Last presentation - slides - manuscripts - demo video • Tools - add suggested functionalities - set goals • Hort 480 genomics • I need to ask to install 2 gene finding tools • GeneMark • GeneMark.hmm eukaryotic • http://exon.biology.gatech.edu/license_download.cgi • Glimmer M • Glimmer 3.02 • http://www.cbcb.umd.edu/software/glimmer/ Taein Lee mainlab

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